Chaos Boi

Howcome when I use the .nds version, it still tells me the version is 0.5? I also connected and everything but there's not gamepad option in sight .

Howcome when using the Gamepad feature, if I'm playing something like Snes9x, the gamepad stops responding when I shut off the snes9x emulator on my computer. Does anyone know if someone is planning on fixing this or knows what causes this?